Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
cydACytochrome d ubiquinol oxidase, subunit I; Identified by similarity to SP:Q09049; match to protein family HMM PF01654. (525 aa)    
Predicted Functional Partners:
cydB
Cytochrome d ubiquinol oxidase, subunit II; Identified by similarity to SP:P11027; match to protein family HMM PF02322; match to protein family HMM TIGR00203.
 0.999
ybgT
Cyd operon protein YbgT; Identified by match to protein family HMM PF08173; match to protein family HMM TIGR02106.
  
 0.993
MCA0168
ABC transporter, ATP-binding family protein; Identified by match to protein family HMM PF00005.
  
  
 0.810
MCA0879
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
     
 0.730
MCA0883
Cytochrome c oxidase, subunit III; Identified by similarity to OMNI:NTL03PA00109; match to protein family HMM PF00510.
      
 0.712
MCA2405
Cytochrome c family protein; Identified by similarity to SP:P95339; match to protein family HMM PF00034.
     
 0.675
MCA2396
Cytochrome c oxidase, subunit I; Identified by similarity to GP:4001615; match to protein family HMM PF00115.
      
 0.659
MCA1187
Identified by match to protein family HMM PF00034.
   
  
 0.624
ccmA
Heme exporter protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family.
      
 0.618
MCA2189
Cytochrome c family protein.
      
 0.618
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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