Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MCA1122General secretion pathway protein M; Identified by similarity to GP:496290. (203 aa)    
Predicted Functional Partners:
MCA1121
General secretion pathway protein L; Identified by similarity to SP:P34027; match to protein family HMM PF05137.
 
     0.958
MCA1120
General secretion pathway protein K.
 
   
 0.938
MCA1118
General secretory pathway protein I; Identified by similarity to SP:P31738.
 
   
 0.885
MCA1119
General secretory pathway protein J; Identified by similarity to SP:P31740; match to protein family HMM PF07963; match to protein family HMM TIGR02532.
 
   
 0.885
MCA1117
General secretion pathway protein H; Identified by similarity to SP:P31736.
 
     0.871
MCA1123
General secretion pathway protein D; Identified by similarity to SP:P45758; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02517.
 
   
 0.829
MCA0310
Conserved domain protein; Identified by similarity to OMNI:NTL01AT1832.
  
     0.722
MCA2118
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SS00882; match to protein family HMM PF03065.
  
     0.710
MCA0807
Copper resistance protein; Identified by match to protein family HMM PF05425.
  
     0.679
MCA0342
Identified by match to protein family HMM PF00488.
  
     0.626
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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