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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA1131Conserved hypothetical protein TIGR00486; Identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486. (255 aa)    
Predicted Functional Partners:
MCA0478
Allophanate hydrolase, subunit 1; Identified by match to protein family HMM PF02682; match to protein family HMM TIGR00370.
 
    0.875
MCA0477
Allophanate hydrolase, subunit 2; Identified by match to protein family HMM PF02626; match to protein family HMM TIGR00724.
 
  
 0.809
pxpA
Conserved hypothetical protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
    
 0.708
MCA1132
Conserved hypothetical protein; Identified by similarity to GP:17131502.
       0.547
MCA2997
Aminotransferase, class I; Identified by match to protein family HMM PF00155.
   
    0.459
MCA1614
Cold-shock DNA-binding domain protein; Identified by match to protein family HMM PF00313; match to protein family HMM PF01936.
     
 0.447
rfbB
dTDP-glucose 4,6-dehydratase; Identified by similarity to SP:P55295; match to protein family HMM PF01370; match to protein family HMM PF07993; match to protein family HMM TIGR01181; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
    0.431
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
  
  
 0.430
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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