MCA1140 protein (Methylococcus capsulatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MCA1140

Hydrogenase subunit; Identified by similarity to SP:P77524. (225 aa)

Predicted Functional Partners:

MCA1138

0.993

MCA1139

0.974

MCA1137

0.973

MCA1141

0.971

MCA1142

0.969

MCA1143

0.543

MCA1144

0.543

Your Current Organism:

Methylococcus capsulatus

NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
MCA1137	MCA1138	Hydrogenase subunit; Identified by similarity to GP:19918502; match to protein family HMM PF01058.	Hydrogenase subunit; Identified by similarity to SP:P77329; match to protein family HMM PF00329; match to protein family HMM PF00346.	0.999
MCA1137	MCA1139	Hydrogenase subunit; Identified by similarity to GP:19918502; match to protein family HMM PF01058.	Hydrogenase subunit; Identified by similarity to SP:P77437; match to protein family HMM PF00361.	0.988
MCA1137	MCA1140	Hydrogenase subunit; Identified by similarity to GP:19918502; match to protein family HMM PF01058.	Hydrogenase subunit; Identified by similarity to SP:P77524.	0.973
MCA1137	MCA1141	Hydrogenase subunit; Identified by similarity to GP:19918502; match to protein family HMM PF01058.	Hydrogenase subunit; Identified by similarity to GP:12744950; match to protein family HMM PF00146.	0.997
MCA1137	MCA1142	Hydrogenase subunit; Identified by similarity to GP:19918502; match to protein family HMM PF01058.	Hydrogenase subunit; Identified by match to protein family HMM PF00361.	0.989
MCA1137	MCA1143	Hydrogenase subunit; Identified by similarity to GP:19918502; match to protein family HMM PF01058.	Conserved hypothetical protein; Identified by similarity to GP:17132082; match to protein family HMM PF05685.	0.465
MCA1137	MCA1144	Hydrogenase subunit; Identified by similarity to GP:19918502; match to protein family HMM PF01058.	Hypothetical protein; Identified by Glimmer2; putative.	0.465
MCA1138	MCA1137	Hydrogenase subunit; Identified by similarity to SP:P77329; match to protein family HMM PF00329; match to protein family HMM PF00346.	Hydrogenase subunit; Identified by similarity to GP:19918502; match to protein family HMM PF01058.	0.999
MCA1138	MCA1139	Hydrogenase subunit; Identified by similarity to SP:P77329; match to protein family HMM PF00329; match to protein family HMM PF00346.	Hydrogenase subunit; Identified by similarity to SP:P77437; match to protein family HMM PF00361.	0.998
MCA1138	MCA1140	Hydrogenase subunit; Identified by similarity to SP:P77329; match to protein family HMM PF00329; match to protein family HMM PF00346.	Hydrogenase subunit; Identified by similarity to SP:P77524.	0.993
MCA1138	MCA1141	Hydrogenase subunit; Identified by similarity to SP:P77329; match to protein family HMM PF00329; match to protein family HMM PF00346.	Hydrogenase subunit; Identified by similarity to GP:12744950; match to protein family HMM PF00146.	0.997
MCA1138	MCA1142	Hydrogenase subunit; Identified by similarity to SP:P77329; match to protein family HMM PF00329; match to protein family HMM PF00346.	Hydrogenase subunit; Identified by match to protein family HMM PF00361.	0.998
MCA1138	MCA1143	Hydrogenase subunit; Identified by similarity to SP:P77329; match to protein family HMM PF00329; match to protein family HMM PF00346.	Conserved hypothetical protein; Identified by similarity to GP:17132082; match to protein family HMM PF05685.	0.471
MCA1138	MCA1144	Hydrogenase subunit; Identified by similarity to SP:P77329; match to protein family HMM PF00329; match to protein family HMM PF00346.	Hypothetical protein; Identified by Glimmer2; putative.	0.471
MCA1139	MCA1137	Hydrogenase subunit; Identified by similarity to SP:P77437; match to protein family HMM PF00361.	Hydrogenase subunit; Identified by similarity to GP:19918502; match to protein family HMM PF01058.	0.988
MCA1139	MCA1138	Hydrogenase subunit; Identified by similarity to SP:P77437; match to protein family HMM PF00361.	Hydrogenase subunit; Identified by similarity to SP:P77329; match to protein family HMM PF00329; match to protein family HMM PF00346.	0.998
MCA1139	MCA1140	Hydrogenase subunit; Identified by similarity to SP:P77437; match to protein family HMM PF00361.	Hydrogenase subunit; Identified by similarity to SP:P77524.	0.974
MCA1139	MCA1141	Hydrogenase subunit; Identified by similarity to SP:P77437; match to protein family HMM PF00361.	Hydrogenase subunit; Identified by similarity to GP:12744950; match to protein family HMM PF00146.	0.991
MCA1139	MCA1142	Hydrogenase subunit; Identified by similarity to SP:P77437; match to protein family HMM PF00361.	Hydrogenase subunit; Identified by match to protein family HMM PF00361.	0.973
MCA1139	MCA1143	Hydrogenase subunit; Identified by similarity to SP:P77437; match to protein family HMM PF00361.	Conserved hypothetical protein; Identified by similarity to GP:17132082; match to protein family HMM PF05685.	0.543

page 1 of 3

Server load: medium (44%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About