Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCA1149Conserved hypothetical protein, truncation. (164 aa)    
Predicted Functional Partners:
MCA1151
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.617
MCA2788
Alcohol dehydrogenase, zinc-containing; Identified by similarity to GP:17132042; match to protein family HMM PF00107.
  
     0.516
MCA0754
Conserved hypothetical protein; Identified by similarity to GP:17130435.
  
     0.488
ubiH
2-octaprenyl-6-methoxyphenol hydroxylase; Identified by similarity to SP:P25534; match to protein family HMM PF01360; match to protein family HMM TIGR01984; match to protein family HMM TIGR01988.
  
     0.478
MCA1150
Putative membrane protein.
       0.460
MCA2119
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SS00882.
  
     0.441
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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