Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
MCA1173Putative membrane protein; Identified by similarity to OMNI:VC0931; match to protein family HMM PF04932. (457 aa)    
Predicted Functional Partners:
MCA1174
Conserved hypothetical protein; Identified by similarity to OMNI:VC0935.
 
     0.903
MCA0147
Putative polysaccharide biosythesis protein; Identified by similarity to GP:4972659; match to protein family HMM PF02397.
 
  
 0.890
MCA1175
Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.
 
  
 0.872
MCA1178
Putative exopolysaccharide export protein, interruption-C; This gene is interrupted by an IS element; identified by similarity to SP:Q45409.
 
  
 0.865
MCA1176
Putative exopolysaccharide export protein, interruption-N; This gene is interrupted by an IS element; identified by similarity to OMNI:NTL01SS00315; match to protein family HMM PF02706.
 
  
 0.847
MCA1429
Chain length determinant protein; Identified by match to protein family HMM PF02706.
 
  
 0.818
MCA1179
Putative capsular polysaccharide biosynthesis protein; Identified by similarity to GP:12006001.
 
    0.775
MCA0149
Chain length determinant protein; Identified by match to protein family HMM PF02706.
 
  
 0.721
MCA2033
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.696
MCA1430
Putative capsular polysaccharide export protein; Identified by similarity to SP:Q45407; match to protein family HMM PF02563.
 
  
 0.616
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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