Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCA1187Identified by match to protein family HMM PF00034. (455 aa)    
Predicted Functional Partners:
MCA1186
Putative membrane protein.
 
   
 0.978
MCA1185
Cytochrome c family protein; Identified by similarity to OMNI:NTL03PA02482; match to protein family HMM PF00034.
 
   
 0.928
MCA2405
Cytochrome c family protein; Identified by similarity to SP:P95339; match to protein family HMM PF00034.
  
  
 0.636
cydA
Cytochrome d ubiquinol oxidase, subunit I; Identified by similarity to SP:Q09049; match to protein family HMM PF01654.
   
  
 0.624
MCA1068
Cytochrome c family protein; Identified by similarity to SP:Q52369; match to protein family HMM PF00034.
      
 0.618
MCA2157
Putative ribonuclease BN; Identified by similarity to GP:17428575; match to protein family HMM PF03631; match to protein family HMM TIGR00765.
     
 0.618
MCA2188
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.618
MCA2196
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.618
gam
Prophage MuMc02, host-nuclease inhibitor protein; Identified by similarity to SP:P06023; match to protein family HMM PF07352.
  
     0.589
MCA0440
Putative TonB-dependent receptor; Identified by similarity to OMNI:NTL03PA03268; match to protein family HMM PF00593; match to protein family HMM PF07715.
  
   
 0.517
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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