Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCA1190Hypothetical protein; Identified by Glimmer2; putative. (300 aa)    
Predicted Functional Partners:
MCA1189
Conserved hypothetical protein; Identified by similarity to GP:13620194.
       0.773
MCA1191
Identified by match to protein family HMM PF02630.
       0.773
MCA1192
Conserved domain protein; Identified by similarity to OMNI:DR1885.
       0.773
MCA0118
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
 
     0.752
sqhC
Squalene-hopene cyclase; Identified by similarity to GP:3164082; match to protein family HMM PF00432; match to protein family HMM TIGR01507; match to protein family HMM TIGR01787.
 
     0.719
MCA2758
Putative membrane protein.
 
     0.714
MCA0810
Putative membrane protein; Identified by similarity to GP:3164083.
 
     0.712
MCA0815
Identified by match to protein family HMM PF04055.
 
     0.697
hppA
Inorganic H(+)-translocating pyrophosphatase; Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force.
       0.668
MCA0811
Identified by match to protein family HMM PF01048.
 
     0.643
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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