Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ppnPConserved hypothetical protein; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions. (103 aa)    
Predicted Functional Partners:
MCA2334
Putative pyrimidine operon regulatory protein PyrR; Identified by similarity to SP:P39765; match to protein family HMM PF00156.
     
 0.924
MCA0448
5'-nucleotidase family protein; Identified by similarity to OMNI:DR0505; match to protein family HMM PF00149; match to protein family HMM PF02872; Belongs to the 5'-nucleotidase family.
     
 0.923
MCA1717
Glycosyl transferase; Identified by match to protein family HMM PF00591; match to protein family HMM PF02885; match to protein family HMM PF07831.
     
 0.923
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
     
 0.902
MCA0047
Carbohydrate kinase, PfkB family; Identified by match to protein family HMM PF00294.
     
  0.900
MCA0827
HD domain protein; Identified by similarity to GP:15980550; match to protein family HMM PF01966.
     
  0.900
MCA0973
Conserved hypothetical protein TIGR00726; Identified by match to protein family HMM PF02578; match to protein family HMM TIGR00726; Belongs to the multicopper oxidase YfiH/RL5 family.
     
  0.900
cdd
Cytosine deaminase; Identified by similarity to SP:Q12178; match to protein family HMM PF00383.
     
  0.900
MCA1322
5'-nucleotidase; Identified by similarity to GP:12659324; match to protein family HMM PF06189.
     
  0.900
MCA1498
Zinc-binding domain protein; Identified by match to protein family HMM PF00383.
     
  0.900
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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