Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MCA1217Putative metalloprotease; Identified by match to protein family HMM PF07504. (839 aa)    
Predicted Functional Partners:
MCA0875
Serine protease, subtilase family; Identified by match to protein family HMM PF00082; match to protein family HMM PF05922; Belongs to the peptidase S8 family.
 
 
 0.892
MCA2704
Serine protease, subtilase family; Identified by match to protein family HMM PF00082.
 
 
 0.766
MCA2227
Hemagglutinin-related protein; Identified by similarity to OMNI:NTL01RSA0540; match to protein family HMM PF05594; match to protein family HMM PF05860; match to protein family HMM TIGR01901.
     
 0.627
MCA1277
Putative outer membrane protein TolC; Identified by similarity to SP:P02930; match to protein family HMM PF02321; match to protein family HMM TIGR01844.
   
  
 0.620
MCA1028
Endonuclease; Identified by similarity to SP:P08466; match to protein family HMM PF01223.
      
 0.618
MCA2224
PKD domain protein; Identified by match to protein family HMM PF00801.
      
 0.618
MCA2512
Acid phosphatase; Identified by similarity to GP:7650481; match to protein family HMM PF04185.
      
 0.618
MCA2974
PKD domain protein.
      
 0.618
MCA2226
Conserved hypothetical protein; Identified by similarity to GP:9946574; match to protein family HMM PF07244.
     
 0.611
MCA0306
Putative spore coat protein, late developmental; Identified by similarity to SP:P27755; match to protein family HMM PF05229.
      
 0.609
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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