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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA1245Pterin-binding domain protein; Identified by match to protein family HMM PF00809. (465 aa)    
Predicted Functional Partners:
MCA1244
Hypothetical protein; Identified by Glimmer2; putative.
     0.961
MCA1243
Conserved hypothetical protein; Identified by similarity to SP:Q58499.
 
   
 0.923
MCA2871
Amino acid kinase family protein; Identified by match to protein family HMM PF00696.
 
   
 0.807
folE
GTP cyclohydrolase I; Identified by similarity to SP:Q54769; match to protein family HMM PF01227; match to protein family HMM TIGR00063.
  
  
 0.804
folB
Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.
  
  
 0.804
MCA2861
Putative kinase, GHMP family; Identified by match to protein family HMM PF00288; match to protein family HMM TIGR00144.
 
     0.784
MCA2860
Formylmethanofuran dehydrogenase; Identified by similarity to GP:1881465.
 
     0.783
MCA2869
Putative S-layer protein.
  
   
 0.781
ffsA
Formylmethanofurane tetrahydromethanopterin formyltransferase; Catalyzes the transfer of a formyl group from 5-formyl tetrahydromethanopterin (5-formyl-H(4)MPT) to methanofuran (MFR) so as to produce formylmethanofuran (formyl-MFR) and tetrahydromethanopterin (H(4)MPT); Belongs to the FTR family.
 
     0.780
MCA2319
Putative formylmethanofurane dehydrogenase, subunit; Identified by similarity to GP:13559971; match to protein family HMM PF07969.
 
     0.778
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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