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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prlCIdentified by similarity to SP:P27298; match to protein family HMM PF01432. (682 aa)    
Predicted Functional Partners:
MCA1254
Rubredoxin; Identified by similarity to SP:P09947; match to protein family HMM PF00301.
  
    0.669
pepP
Xaa-pro aminopeptidase; Identified by similarity to SP:P15034; match to protein family HMM PF00557; match to protein family HMM PF05195; Belongs to the peptidase M24B family.
 
 
 
 0.486
hppA-2
V-type H(+)-translocating pyrophosphatase; Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force.
       0.427
MCA0996
Decarboxylase, thiamine pyrophosphate enzyme family; Identified by similarity to SP:P23234; match to protein family HMM PF00205; match to protein family HMM PF02776.
 
      0.413
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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