MCA1264 protein (Methylococcus capsulatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

MCA1264

ABC transporter, periplasmic substrate-binding protein; Identified by similarity to SP:P23843; match to protein family HMM PF00496. (721 aa)

Predicted Functional Partners:

MCA1265

0.999

MCA1266

0.999

MCA1268

0.997

MCA0769

0.872

serB

0.746

MCA1269

0.745

MCA0840

0.676

fabI

0.671

MCA1941

0.666

MCA1872

0.645

Your Current Organism:

Methylococcus capsulatus

NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MCA0769	MCA1264	MCA0769	MCA1264	Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; Identified by similarity to SP:P52647; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM PF02775; match to protein family HMM TIGR02176.	ABC transporter, periplasmic substrate-binding protein; Identified by similarity to SP:P23843; match to protein family HMM PF00496.	0.872
MCA0769	serB	MCA0769	MCA1267	Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; Identified by similarity to SP:P52647; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM PF02775; match to protein family HMM TIGR02176.	Phosphoserine phosphatase; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488.	0.455
MCA0840	MCA1264	MCA0840	MCA1264	Putative periplasmic amino acid-binding protein; Identified by similarity to SP:P30860.	ABC transporter, periplasmic substrate-binding protein; Identified by similarity to SP:P23843; match to protein family HMM PF00496.	0.676
MCA0840	MCA1268	MCA0840	MCA1268	Putative periplasmic amino acid-binding protein; Identified by similarity to SP:P30860.	ABC transporter, ATP-binding protein; Identified by similarity to OMNI:NTL03PA01808; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	0.618
MCA0840	MCA1872	MCA0840	MCA1872	Putative periplasmic amino acid-binding protein; Identified by similarity to SP:P30860.	C4-dicarboxylate transporter; Identified by similarity to SP:P37312; match to protein family HMM PF00375; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.	0.661
MCA0840	MCA1941	MCA0840	MCA1941	Putative periplasmic amino acid-binding protein; Identified by similarity to SP:P30860.	Putative sugar ABC transporter, sugar-binding protein; Identified by similarity to OMNI:NTL01LM1722; match to protein family HMM PF01547.	0.671
MCA1264	MCA0769	MCA1264	MCA0769	ABC transporter, periplasmic substrate-binding protein; Identified by similarity to SP:P23843; match to protein family HMM PF00496.	Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; Identified by similarity to SP:P52647; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855; match to protein family HMM PF02775; match to protein family HMM TIGR02176.	0.872
MCA1264	MCA0840	MCA1264	MCA0840	ABC transporter, periplasmic substrate-binding protein; Identified by similarity to SP:P23843; match to protein family HMM PF00496.	Putative periplasmic amino acid-binding protein; Identified by similarity to SP:P30860.	0.676
MCA1264	MCA1265	MCA1264	MCA1265	ABC transporter, periplasmic substrate-binding protein; Identified by similarity to SP:P23843; match to protein family HMM PF00496.	ABC transporter, permease protein; Identified by similarity to SP:P26903; match to protein family HMM PF00528.	0.999
MCA1264	MCA1266	MCA1264	MCA1266	ABC transporter, periplasmic substrate-binding protein; Identified by similarity to SP:P23843; match to protein family HMM PF00496.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.999
MCA1264	MCA1268	MCA1264	MCA1268	ABC transporter, periplasmic substrate-binding protein; Identified by similarity to SP:P23843; match to protein family HMM PF00496.	ABC transporter, ATP-binding protein; Identified by similarity to OMNI:NTL03PA01808; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	0.997
MCA1264	MCA1269	MCA1264	MCA1269	ABC transporter, periplasmic substrate-binding protein; Identified by similarity to SP:P23843; match to protein family HMM PF00496.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SMB00250; match to protein family HMM PF06803.	0.745
MCA1264	MCA1872	MCA1264	MCA1872	ABC transporter, periplasmic substrate-binding protein; Identified by similarity to SP:P23843; match to protein family HMM PF00496.	C4-dicarboxylate transporter; Identified by similarity to SP:P37312; match to protein family HMM PF00375; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.	0.645
MCA1264	MCA1941	MCA1264	MCA1941	ABC transporter, periplasmic substrate-binding protein; Identified by similarity to SP:P23843; match to protein family HMM PF00496.	Putative sugar ABC transporter, sugar-binding protein; Identified by similarity to OMNI:NTL01LM1722; match to protein family HMM PF01547.	0.666
MCA1264	fabI	MCA1264	MCA1263	ABC transporter, periplasmic substrate-binding protein; Identified by similarity to SP:P23843; match to protein family HMM PF00496.	Enoyl-(acyl-carrier-protein) reductase; Identified by similarity to SP:P29132; match to protein family HMM PF00106.	0.671
MCA1264	serB	MCA1264	MCA1267	ABC transporter, periplasmic substrate-binding protein; Identified by similarity to SP:P23843; match to protein family HMM PF00496.	Phosphoserine phosphatase; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488.	0.746
MCA1265	MCA1264	MCA1265	MCA1264	ABC transporter, permease protein; Identified by similarity to SP:P26903; match to protein family HMM PF00528.	ABC transporter, periplasmic substrate-binding protein; Identified by similarity to SP:P23843; match to protein family HMM PF00496.	0.999
MCA1265	MCA1266	MCA1265	MCA1266	ABC transporter, permease protein; Identified by similarity to SP:P26903; match to protein family HMM PF00528.	ABC transporter, permease protein; Identified by match to protein family HMM PF00528.	0.999
MCA1265	MCA1268	MCA1265	MCA1268	ABC transporter, permease protein; Identified by similarity to SP:P26903; match to protein family HMM PF00528.	ABC transporter, ATP-binding protein; Identified by similarity to OMNI:NTL03PA01808; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.	0.996
MCA1265	MCA1269	MCA1265	MCA1269	ABC transporter, permease protein; Identified by similarity to SP:P26903; match to protein family HMM PF00528.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SMB00250; match to protein family HMM PF06803.	0.711

page 1 of 4

Server load: low (30%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About