Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCA1269Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SMB00250; match to protein family HMM PF06803. (132 aa)    
Predicted Functional Partners:
MCA1266
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
     0.746
MCA1264
ABC transporter, periplasmic substrate-binding protein; Identified by similarity to SP:P23843; match to protein family HMM PF00496.
 
     0.745
serB
Phosphoserine phosphatase; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488.
       0.737
MCA1268
ABC transporter, ATP-binding protein; Identified by similarity to OMNI:NTL03PA01808; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
       0.737
MCA1265
ABC transporter, permease protein; Identified by similarity to SP:P26903; match to protein family HMM PF00528.
       0.711
fabI
Enoyl-(acyl-carrier-protein) reductase; Identified by similarity to SP:P29132; match to protein family HMM PF00106.
       0.493
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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