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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA1366Hypothetical protein; Identified by Glimmer2; putative. (167 aa)    
Predicted Functional Partners:
MCA1367
ABC transporter, ATP-binding family protein; Identified by similarity to SP:P45535; match to protein family HMM PF00005.
 
     0.800
MCA0744
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA04460; match to protein family HMM PF06835.
  
     0.754
MCA2081
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.752
MCA0527
Putative membrane protein; Identified by match to protein family HMM PF02517.
  
     0.748
MCA1966
STAS domain protein; Identified by match to protein family HMM PF01740.
  
     0.742
MCA2739
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.711
MCA2846
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01NM00155.
  
     0.661
MCA2036
Putative membrane protein; Identified by similarity to OMNI:NTL03PA04934.
  
     0.612
MCA0564
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.604
rlpB
Rare lipoprotein B; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family.
  
     0.589
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.