Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MCA1384Methyltransferase, UbiE/COQ5 family. (247 aa)    
Predicted Functional Partners:
MCA0807
Copper resistance protein; Identified by match to protein family HMM PF05425.
  
     0.735
radA
DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
       0.677
MCA1386
Hypothetical protein; Identified by Glimmer2; putative.
       0.675
MCA0340
Putative membrane protein; Identified by similarity to GP:17133197.
  
     0.627
MCA1689
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.619
MCA2129
Identified by similarity to GP:4580028; match to protein family HMM PF07731; match to protein family HMM PF07732.
  
     0.593
htpX
Heat shock protein HtpX; Identified by similarity to SP:P23894; match to protein family HMM PF01435; match to protein family HMM PF06509; Belongs to the peptidase M48B family.
       0.542
MCA1122
General secretion pathway protein M; Identified by similarity to GP:496290.
  
     0.537
MCA2718
Conserved hypothetical protein; Identified by similarity to GP:1785478.
  
     0.535
MCA2963
Conserved domain protein; Identified by similarity to SP:P48837.
  
     0.529
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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