MCA1392 protein (Methylococcus capsulatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MCA1392

Formate dehydrogenase, beta subunit; Identified by similarity to GP:3724144; match to protein family HMM PF01512. (516 aa)

Predicted Functional Partners:

MCA1393

0.999

nuoCD

0.995

MCA1391

0.995

MCA1389

0.993

MCA0770

0.991

nuoE

0.986

MCA2577

0.968

MCA2725

0.959

nuoG

0.949

MCA2576

0.948

Your Current Organism:

Methylococcus capsulatus

NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MCA0770	MCA1389	MCA0770	MCA1389	Pyridine nucleotide-disulphide oxidoreductase family protein; Identified by similarity to GP:10120476; match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992.	Formate dehydrogenase, delta subunit; Identified by similarity to GP:3724147.	0.900
MCA0770	MCA1391	MCA0770	MCA1391	Pyridine nucleotide-disulphide oxidoreductase family protein; Identified by similarity to GP:10120476; match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992.	Formate dehydrogenase, alpha subunit; Identified by similarity to GP:17743211; match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591.	0.993
MCA0770	MCA1392	MCA0770	MCA1392	Pyridine nucleotide-disulphide oxidoreductase family protein; Identified by similarity to GP:10120476; match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992.	Formate dehydrogenase, beta subunit; Identified by similarity to GP:3724144; match to protein family HMM PF01512.	0.991
MCA0770	MCA1393	MCA0770	MCA1393	Pyridine nucleotide-disulphide oxidoreductase family protein; Identified by similarity to GP:10120476; match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992.	Formate dehydrogenase, gamma subunit; Identified by similarity to GP:3724143; match to protein family HMM PF01257.	0.923
MCA0770	MCA2576	MCA0770	MCA2576	Pyridine nucleotide-disulphide oxidoreductase family protein; Identified by similarity to GP:10120476; match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992.	Formate dehydrogenase, alpha subunit; Identified by similarity to SP:P07658; match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591.	0.985
MCA0770	MCA2577	MCA0770	MCA2577	Pyridine nucleotide-disulphide oxidoreductase family protein; Identified by similarity to GP:10120476; match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992.	Putative dehydrogenase subunit; Identified by similarity to GP:4007678; match to protein family HMM PF01257; match to protein family HMM PF01512.	0.992
MCA0770	MCA2725	MCA0770	MCA2725	Pyridine nucleotide-disulphide oxidoreductase family protein; Identified by similarity to GP:10120476; match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992.	NAD-reducing hydrogenase, gamma subunit; Identified by similarity to SP:P22318; match to protein family HMM PF00111.	0.919
MCA0770	nuoCD	MCA0770	MCA1357	Pyridine nucleotide-disulphide oxidoreductase family protein; Identified by similarity to GP:10120476; match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992.	NADH dehydrogenase I, C/D subunits; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family.	0.523
MCA1389	MCA0770	MCA1389	MCA0770	Formate dehydrogenase, delta subunit; Identified by similarity to GP:3724147.	Pyridine nucleotide-disulphide oxidoreductase family protein; Identified by similarity to GP:10120476; match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992.	0.900
MCA1389	MCA1391	MCA1389	MCA1391	Formate dehydrogenase, delta subunit; Identified by similarity to GP:3724147.	Formate dehydrogenase, alpha subunit; Identified by similarity to GP:17743211; match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591.	0.997
MCA1389	MCA1392	MCA1389	MCA1392	Formate dehydrogenase, delta subunit; Identified by similarity to GP:3724147.	Formate dehydrogenase, beta subunit; Identified by similarity to GP:3724144; match to protein family HMM PF01512.	0.993
MCA1389	MCA1393	MCA1389	MCA1393	Formate dehydrogenase, delta subunit; Identified by similarity to GP:3724147.	Formate dehydrogenase, gamma subunit; Identified by similarity to GP:3724143; match to protein family HMM PF01257.	0.994
MCA1389	MCA2576	MCA1389	MCA2576	Formate dehydrogenase, delta subunit; Identified by similarity to GP:3724147.	Formate dehydrogenase, alpha subunit; Identified by similarity to SP:P07658; match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591.	0.958
MCA1389	MCA2577	MCA1389	MCA2577	Formate dehydrogenase, delta subunit; Identified by similarity to GP:3724147.	Putative dehydrogenase subunit; Identified by similarity to GP:4007678; match to protein family HMM PF01257; match to protein family HMM PF01512.	0.988
MCA1391	MCA0770	MCA1391	MCA0770	Formate dehydrogenase, alpha subunit; Identified by similarity to GP:17743211; match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591.	Pyridine nucleotide-disulphide oxidoreductase family protein; Identified by similarity to GP:10120476; match to protein family HMM PF00037; match to protein family HMM PF00070; match to protein family HMM PF07992.	0.993
MCA1391	MCA1389	MCA1391	MCA1389	Formate dehydrogenase, alpha subunit; Identified by similarity to GP:17743211; match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591.	Formate dehydrogenase, delta subunit; Identified by similarity to GP:3724147.	0.997
MCA1391	MCA1392	MCA1391	MCA1392	Formate dehydrogenase, alpha subunit; Identified by similarity to GP:17743211; match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591.	Formate dehydrogenase, beta subunit; Identified by similarity to GP:3724144; match to protein family HMM PF01512.	0.995
MCA1391	MCA1393	MCA1391	MCA1393	Formate dehydrogenase, alpha subunit; Identified by similarity to GP:17743211; match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591.	Formate dehydrogenase, gamma subunit; Identified by similarity to GP:3724143; match to protein family HMM PF01257.	0.995
MCA1391	MCA2576	MCA1391	MCA2576	Formate dehydrogenase, alpha subunit; Identified by similarity to GP:17743211; match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591.	Formate dehydrogenase, alpha subunit; Identified by similarity to SP:P07658; match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591.	0.911
MCA1391	MCA2577	MCA1391	MCA2577	Formate dehydrogenase, alpha subunit; Identified by similarity to GP:17743211; match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591.	Putative dehydrogenase subunit; Identified by similarity to GP:4007678; match to protein family HMM PF01257; match to protein family HMM PF01512.	0.986

page 1 of 5

Server load: low (40%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About