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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA1399Putative ABC transporter, permease protein; Gene cluster supports this as an ABC transporter component; identified by match to protein family HMM PF02687. (830 aa)    
Predicted Functional Partners:
MCA1400
ABC transporter, ATP-binding protein; Identified by similarity to OMNI:VCA0782; match to protein family HMM PF00005.
 
     0.936
MCA1401
Arylesterase; Identified by similarity to SP:Q07792; match to protein family HMM PF00657.
 
     0.913
MCA1808
Putative ABC-transporter permease protein; Gene luster supports this as an ABC transporter; identified by match to protein family HMM PF02687.
  
 
  0.771
MCA0174
Putative ABC transporter, permease protein; Gene cluster is evidence for assignment as ABC transporter subunit; identified by match to protein family HMM PF02405.
   
 
  0.721
MCA1402
Conserved hypothetical protein; Identified by similarity to GP:19071499.
       0.572
MCA1942
Sugar ABC transporter, permease protein; Identified by similarity to SP:P29823; match to protein family HMM PF00528.
     
  0.540
MCA1944
Sugar ABC transportor, ATP-binding protein; Identified by similarity to SP:P19566; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
     
  0.540
MCA2121
ABC transporter, permease protein; Identified by match to protein family HMM PF01061.
  
  
  0.464
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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