Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MCA1439Conserved domain protein; Identified by similarity to OMNI:NTL01MT01553. (487 aa)    
Predicted Functional Partners:
MCA1440
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF07228.
 
     0.883
MCA1432
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
 
   0.879
MCA1433
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
 
   0.829
MCA1429
Chain length determinant protein; Identified by match to protein family HMM PF02706.
 
   
 0.814
MCA1434
Identified by similarity to GP:15024655; match to protein family HMM PF00535.
 
     0.814
MCA1437
Bacterial sugar transferase/glycosyl transferase, WecB/TagA/CpsF family protein; Identified by match to protein family HMM PF03808; match to protein family HMM TIGR00696; Belongs to the glycosyltransferase 26 family.
 
     0.809
MCA1435
Glycosyl transferase, group 2 family; Identified by match to protein family HMM PF00535.
 
    0.802
MCA1428
Glycosyl transferase, group 1 family protein; Identified by similarity to OMNI:CC0755; match to protein family HMM PF00534.
 
   0.782
MCA1438
Putative membrane protein; Identified by similarity to GP:15023201.
       0.773
rfbC
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.764
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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