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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA1483Carbohydrate efflux ABC transporter, permease protein, NodJ family; Identified by similarity to SP:P55475; match to protein family HMM PF01061; match to protein family HMM TIGR01291. (254 aa)    
Predicted Functional Partners:
MCA1484
Carbohydrate efflux ABC transporter, ATP-binding protein, NodI family; Identified by similarity to SP:P72335; match to protein family HMM PF00005.
 
  
 0.988
MCA1482
ATP-dependent helicase HrpA; Identified by similarity to SP:P43329; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04408; match to protein family HMM PF07717; match to protein family HMM TIGR01967.
       0.773
MCA0093
ABC transporter, ATP-binding family protein; Identified by match to protein family HMM PF00005.
  
 
 0.733
MCA0625
Putative polysaccharide efflux ABC transporter, ATP-binding protein; Identified by similarity to GP:15025336; match to protein family HMM PF00005.
  
 
 0.733
MCA2549
Efflux ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
  
 
 0.733
recA
recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
 
      0.629
MCA2561
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
  
  
 0.518
MCA1485
Conserved hypothetical protein; Identified by similarity to GP:19887278; match to protein family HMM PF01887.
       0.517
tatC
Sec-independent protein translocase TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.
       0.489
MCA2121
ABC transporter, permease protein; Identified by match to protein family HMM PF01061.
 
  
 
0.462
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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