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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA1509TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721. (699 aa)    
Predicted Functional Partners:
MCA1508
Glycosyl transferase, group 2 family; Identified by match to protein family HMM PF00535.
       0.732
MCA1518
TPR domain protein, interruption-N; This gene is interrupted by an IS element; identified by match to protein family HMM PF00515.
  
     0.665
MCA1511
TPR domain protein; Identified by match to protein family HMM PF00515.
     0.663
MCA1512
TPR domain protein; Identified by similarity to SP:P21296; match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.
 
0.557
MCA1507
Hypothetical protein; Identified by Glimmer2; putative.
       0.534
MCA1516
TPR domain protein, interruption-C; This gene is interrupted by an IS element; identified by similarity to GP:17430189; match to protein family HMM PF00515.
 
 0.510
MCA2199
Ankyrin repeat domain protein; Identified by match to protein family HMM PF00023.
  
 
   0.416
MCA1178
Putative exopolysaccharide export protein, interruption-C; This gene is interrupted by an IS element; identified by similarity to SP:Q45409.
     
 0.410
MCA1429
Chain length determinant protein; Identified by match to protein family HMM PF02706.
     
 0.410
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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