Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
pilTTwitching motility protein PilT; Identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420. (344 aa)    
Predicted Functional Partners:
pilD
Leader peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.881
pilU
Twitching motility protein PilU; Identified by similarity to OMNI:NTL03PA00397; match to protein family HMM PF00437; match to protein family HMM TIGR01420.
 
  
0.854
pilM
Type 4 fimbrial biogenesis protein PilM; Identified by similarity to OMNI:NTL03PA05045; match to protein family HMM TIGR01175.
 
   
 0.851
pilC
Type IV pilin biogenesis protein PilC; Identified by similarity to GP:151066; match to protein family HMM PF00482.
 
  
 0.839
MCA1115
General secretion pathway protein F; Identified by similarity to SP:P31744; match to protein family HMM PF00482.
 
  
 0.837
pilQ
Fimbrial assembly protein PilQ; Identified by similarity to SP:P34750; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660; match to protein family HMM TIGR02515.
 
   
 0.798
pilO
Type 4 fimbrial biogenesis protein PilO; Identified by similarity to OMNI:NTL03PA05043; match to protein family HMM PF04350.
 
  
 0.698
pilN
Type 4 fimbrial biogenesis protein PilN; Identified by similarity to OMNI:NTL03PA05044; match to protein family HMM PF05137.
 
  
 0.660
MCA1536
Conserved hypothetical protein TIGR00044; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
       0.647
pilP
Type 4 fimbrial biogenesis protein PilP; Identified by similarity to OMNI:NTL03PA05042; match to protein family HMM PF04351.
  
   
 0.630
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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