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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA1561ABC transporter, ATP-binding protein; Identified by similarity to OMNI:NTL03PA03672; match to protein family HMM PF00005. (312 aa)    
Predicted Functional Partners:
MCA1562
Putative ABC transporter, permease protein; Identified by similarity to GP:14531034.
 
 
 0.974
MCA1563
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA03670.
 
   
 0.940
MCA1564
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA04040.
 
     0.928
MCA1809
ABC transporter, ATP-binding protein; Identified by similarity to SP:P75831; match to protein family HMM PF00005.
 
    
0.907
MCA3077
Conserved hypothetical integral membrane protein; Identified by similarity to GP:17135440; similarity to OMNI:NT01MC2877.
 
 
 0.883
MCA0557
ABC transporter, permease protein; Identified by similarity to SP:P31993; match to protein family HMM PF01061.
  
 0.722
MCA3076
Conserved hypothetical protein; Identified by similarity to GP:17135441.
 
   
 0.540
MCA1565
Protozoan/cyanobacterial globin family protein; Identified by similarity to SP:P17724.
       0.466
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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