STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA1564Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA04040. (386 aa)    
Predicted Functional Partners:
MCA1563
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA03670.
 
     0.947
MCA1562
Putative ABC transporter, permease protein; Identified by similarity to GP:14531034.
 
     0.939
MCA1561
ABC transporter, ATP-binding protein; Identified by similarity to OMNI:NTL03PA03672; match to protein family HMM PF00005.
 
     0.928
MCA1225
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.591
MCA1289
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.580
MCA0776
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.531
MCA1565
Protozoan/cyanobacterial globin family protein; Identified by similarity to SP:P17724.
       0.498
MCA3075
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.433
MCA1551
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.409
MCA3078
ABC transporter, ATP-binding family protein; Identified by similarity to OMNI:NTL01SS02600; match to protein family HMM PF00005.
 
     0.409
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.