STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA1586Conserved hypothetical protein; Identified by similarity to GP:15978700. (1136 aa)    
Predicted Functional Partners:
MCA0941
Putative glycosyl hydrolase; Identified by match to protein family HMM PF01301; Belongs to the glycosyl hydrolase 35 family.
 
   
 0.748
MCA1941
Putative sugar ABC transporter, sugar-binding protein; Identified by similarity to OMNI:NTL01LM1722; match to protein family HMM PF01547.
 
   
 0.739
MCA1924
ABC transporter, permease family protein; Identified by similarity to OMNI:TM0812; match to protein family HMM PF00528.
 
   
 0.501
MCA0338
Cytochrome c5530 family protein; Identified by similarity to GP:4325062.
  
     0.496
MCA1587
Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase; Identified by similarity to SP:Q9AEM9; match to protein family HMM PF03894.
       0.487
MCA1942
Sugar ABC transporter, permease protein; Identified by similarity to SP:P29823; match to protein family HMM PF00528.
 
     0.475
MCA2285
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.448
MCA1585
Putative fatty acid cis/trans isomerase; Identified by similarity to GP:5257178; match to protein family HMM PF06934.
       0.445
MCA1631
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.413
MCA2187
Identified by match to protein family HMM PF00245; Belongs to the alkaline phosphatase family.
  
     0.405
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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