MCA1619 protein (Methylococcus capsulatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MCA1619

Trypsin domain protein; Identified by match to protein family HMM PF00089. (178 aa)

Predicted Functional Partners:

MCA1620

0.561

MCA1470

0.545

rsfS

0.514

MCA1204

0.452

MCA1006

0.424

MCA2199

0.410

MCA0523

0.404

Your Current Organism:

Methylococcus capsulatus

NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MCA0523	MCA1619	MCA0523	MCA1619	Putative peptidyl-prolyl cis-trans isomerase, FKBP-type; Identified by similarity to SP:P45523; match to protein family HMM PF00254.	Trypsin domain protein; Identified by match to protein family HMM PF00089.	0.404
MCA1006	MCA1204	MCA1006	MCA1204	Acyltransferase family protein; Identified by similarity to OMNI:NTL01AA00691; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01553.	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	0.664
MCA1006	MCA1619	MCA1006	MCA1619	Acyltransferase family protein; Identified by similarity to OMNI:NTL01AA00691; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01553.	Trypsin domain protein; Identified by match to protein family HMM PF00089.	0.424
MCA1006	MCA2199	MCA1006	MCA2199	Acyltransferase family protein; Identified by similarity to OMNI:NTL01AA00691; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01553.	Ankyrin repeat domain protein; Identified by match to protein family HMM PF00023.	0.964
MCA1006	rsfS	MCA1006	MCA2027	Acyltransferase family protein; Identified by similarity to OMNI:NTL01AA00691; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01553.	Iojap-related protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.	0.756
MCA1204	MCA1006	MCA1204	MCA1006	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Acyltransferase family protein; Identified by similarity to OMNI:NTL01AA00691; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01553.	0.664
MCA1204	MCA1619	MCA1204	MCA1619	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Trypsin domain protein; Identified by match to protein family HMM PF00089.	0.452
MCA1204	MCA2199	MCA1204	MCA2199	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Ankyrin repeat domain protein; Identified by match to protein family HMM PF00023.	0.506
MCA1470	MCA1619	MCA1470	MCA1619	Conserved domain protein; Identified by similarity to GP:18496604.	Trypsin domain protein; Identified by match to protein family HMM PF00089.	0.545
MCA1619	MCA0523	MCA1619	MCA0523	Trypsin domain protein; Identified by match to protein family HMM PF00089.	Putative peptidyl-prolyl cis-trans isomerase, FKBP-type; Identified by similarity to SP:P45523; match to protein family HMM PF00254.	0.404
MCA1619	MCA1006	MCA1619	MCA1006	Trypsin domain protein; Identified by match to protein family HMM PF00089.	Acyltransferase family protein; Identified by similarity to OMNI:NTL01AA00691; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01553.	0.424
MCA1619	MCA1204	MCA1619	MCA1204	Trypsin domain protein; Identified by match to protein family HMM PF00089.	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	0.452
MCA1619	MCA1470	MCA1619	MCA1470	Trypsin domain protein; Identified by match to protein family HMM PF00089.	Conserved domain protein; Identified by similarity to GP:18496604.	0.545
MCA1619	MCA1620	MCA1619	MCA1620	Trypsin domain protein; Identified by match to protein family HMM PF00089.	ISMca4, transposase, OrfAB; Identified by match to protein family HMM PF00665; match to protein family HMM PF01527.	0.561
MCA1619	MCA2199	MCA1619	MCA2199	Trypsin domain protein; Identified by match to protein family HMM PF00089.	Ankyrin repeat domain protein; Identified by match to protein family HMM PF00023.	0.410
MCA1619	rsfS	MCA1619	MCA2027	Trypsin domain protein; Identified by match to protein family HMM PF00089.	Iojap-related protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.	0.514
MCA1620	MCA1619	MCA1620	MCA1619	ISMca4, transposase, OrfAB; Identified by match to protein family HMM PF00665; match to protein family HMM PF01527.	Trypsin domain protein; Identified by match to protein family HMM PF00089.	0.561
MCA2199	MCA1006	MCA2199	MCA1006	Ankyrin repeat domain protein; Identified by match to protein family HMM PF00023.	Acyltransferase family protein; Identified by similarity to OMNI:NTL01AA00691; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01553.	0.964
MCA2199	MCA1204	MCA2199	MCA1204	Ankyrin repeat domain protein; Identified by match to protein family HMM PF00023.	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	0.506
MCA2199	MCA1619	MCA2199	MCA1619	Ankyrin repeat domain protein; Identified by match to protein family HMM PF00023.	Trypsin domain protein; Identified by match to protein family HMM PF00089.	0.410

page 1 of 2

Server load: medium (46%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About