Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCA1631Hypothetical protein; Identified by Glimmer2; putative. (278 aa)    
Predicted Functional Partners:
MCA1204
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF01590; match to protein family HMM PF01627; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
   
 
 0.836
MCA1633
Conserved hypothetical protein; Identified by similarity to OMNI:DR1127; match to protein family HMM PF05816; Belongs to the TelA family.
 
  
 0.803
MCA1632
Mechanosensitive ion channel family protein; Identified by match to protein family HMM PF00924.
       0.773
MCA3080
Conserved hypothetical protein; Identified by similarity to GP:17131839; match to protein family HMM PF04020.
  
    0.762
MCA1394
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.526
MCA2169
BNR repeat domain protein; Identified by match to protein family HMM PF02012.
  
     0.498
MCA0941
Putative glycosyl hydrolase; Identified by match to protein family HMM PF01301; Belongs to the glycosyl hydrolase 35 family.
  
     0.478
MCA2174
Adhesion lipoprotein; Identified by similarity to GP:4249623; match to protein family HMM PF01297.
  
     0.476
MCA1801
Identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
  
     0.432
MCA1586
Conserved hypothetical protein; Identified by similarity to GP:15978700.
  
     0.413
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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