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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA1675ABC transporter, permease family protein; Identified by match to protein family HMM PF00664. (571 aa)    
Predicted Functional Partners:
MCA0908
ATPase, AAA family; Identified by match to protein family HMM PF00004.
  
  
 0.727
gabD
Succinate-semialdehyde dehydrogenase (NADP+); Identified by similarity to SP:P25526; match to protein family HMM PF00171; match to protein family HMM TIGR01780; Belongs to the aldehyde dehydrogenase family.
     
 0.703
MCA0262
ATPase, AAA family; Identified by match to protein family HMM PF00004.
     
 0.691
MCA2643
Conserved hypothetical protein; Identified by similarity to GP:17427847.
    
 0.687
recA
recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
    
   0.627
MCA0717
Putative lipoprotein; Identified by similarity to GP:17430383.
  
     0.560
MCA0553
Discoidin domain protein; Identified by similarity to GP:9107638; match to protein family HMM PF00754; match to protein family HMM PF01851.
 
     0.521
MCA1006
Acyltransferase family protein; Identified by similarity to OMNI:NTL01AA00691; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF01553.
   
 
 0.493
hypE
Hydrogenase expression/formation protein HypE; Identified by similarity to SP:P40595; match to protein family HMM PF02769; match to protein family HMM TIGR02124.
       0.454
MCA1674
Putative methyl-accepting chemotaxis protein; Identified by similarity to SP:P39216; match to protein family HMM PF00015; match to protein family HMM PF00672.
       0.442
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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