Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
MCA1687Conserved hypothetical protein; Identified by similarity to GP:17740495; match to protein family HMM PF01935. (546 aa)    
Predicted Functional Partners:
MCA0280
Hypothetical protein; Identified by Glimmer2; putative.
   
 
 0.787
MCA1689
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.665
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
   
   0.589
MCA1688
Hypothetical protein; Identified by Glimmer2; putative.
       0.572
MCA1690
Penicillin-insensitive murein endopeptidase, truncation; Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus.
       0.572
MCA1686
Anti-sigma B factor antagonist; Identified by similarity to SP:P10727; match to protein family HMM PF01740; match to protein family HMM TIGR00377; Belongs to the anti-sigma-factor antagonist family.
       0.542
MCA1685
Anti-sigma B factor; Identified by similarity to SP:P17904; match to protein family HMM PF02518.
       0.528
MCA1683
Sensory box protein; Identified by match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF07228; match to protein family HMM TIGR00229.
       0.497
MCA1684
Conserved domain protein; Identified by similarity to GP:11830835; match to protein family HMM PF05088.
       0.497
MCA2321
Putative TonB-dependent receptor; Identified by similarity to OMNI:CC0214; match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.487
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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