Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
MCA1690Penicillin-insensitive murein endopeptidase, truncation; Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus. (279 aa)    
Predicted Functional Partners:
MCA1688
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
MCA1689
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
MCA0796
Tat (twin-arginine translocation) pathway signal sequence domain protein; Identified by match to protein family HMM PF05951; match to protein family HMM TIGR01409.
  
     0.748
prmB
Modification methylase, HemK family; Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue; Belongs to the protein N5-glutamine methyltransferase family. PrmB subfamily.
    
 0.668
MCA1003
Conserved hypothetical protein; Identified by similarity to OMNI:NTL02ML0419; match to protein family HMM PF01471.
  
     0.596
aroC
Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system.
 
    0.574
MCA1687
Conserved hypothetical protein; Identified by similarity to GP:17740495; match to protein family HMM PF01935.
       0.572
glk
Glucokinase; Identified by similarity to SP:P46880; match to protein family HMM PF00480; match to protein family HMM PF02685; match to protein family HMM TIGR00749; Belongs to the bacterial glucokinase family.
      0.536
MCA0873
ATP-dependent protease La domain protein.
  
     0.465
MCA0637
Conserved domain protein; Identified by similarity to OMNI:NTL01SM02683.
  
     0.429
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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