Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
MCA1728ZIP zinc transporter family protein; Identified by similarity to GP:19916878; match to protein family HMM PF02535. (277 aa)    
Predicted Functional Partners:
MCA1729
Conserved domain protein; Identified by similarity to GP:19914581; match to protein family HMM PF06803.
       0.773
cbpA
Curved DNA-binding protein; Identified by similarity to SP:P36659; match to protein family HMM PF00226; match to protein family HMM PF01556.
     
 0.636
MCA1730
Heat shock protein, Hsp20 family; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family.
       0.557
MCA1731
Heat shock protein, Hsp20 family; Identified by match to protein family HMM PF00011; Belongs to the small heat shock protein (HSP20) family.
       0.515
MCA1900
Cation efflux family protein; Identified by similarity to GP:15025562; match to protein family HMM PF01545; match to protein family HMM TIGR01297.
   
 0.403
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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