STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA1808Putative ABC-transporter permease protein; Gene luster supports this as an ABC transporter; identified by match to protein family HMM PF02687. (366 aa)    
Predicted Functional Partners:
MCA1809
ABC transporter, ATP-binding protein; Identified by similarity to SP:P75831; match to protein family HMM PF00005.
 
 
 0.986
MCA1810
Conserved hypothetical protein; Identified by similarity to SP:P75830.
 
  
 0.976
MCA1841
ABC transporter, ATP-binding family protein; Identified by similarity to OMNI:NTL03PA00074; match to protein family HMM PF00005.
  
 
 0.778
MCA2172
ABC transporter, ATP-binding family protein; Identified by similarity to OMNI:NTL03PA02857; match to protein family HMM PF00005.
  
 
 0.778
lolD
Lipoprotein ABC transporter, ATP-binding protein LolD; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
  
 
 0.778
MCA1399
Putative ABC transporter, permease protein; Gene cluster supports this as an ABC transporter component; identified by match to protein family HMM PF02687.
  
 
  0.771
MCA0174
Putative ABC transporter, permease protein; Gene cluster is evidence for assignment as ABC transporter subunit; identified by match to protein family HMM PF02405.
     
 0.723
hslR
Heat shock protein 15; Identified by similarity to SP:P45802; match to protein family HMM PF01479; Belongs to the HSP15 family.
  
    0.718
MCA1807
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
 
   
 0.711
MCA2325
Efflux transporter, RND family, MFP subunit; Identified by similarity to GP:8388788; match to protein family HMM TIGR01730.
 
 
 0.651
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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