STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA1809ABC transporter, ATP-binding protein; Identified by similarity to SP:P75831; match to protein family HMM PF00005. (235 aa)    
Predicted Functional Partners:
MCA1808
Putative ABC-transporter permease protein; Gene luster supports this as an ABC transporter; identified by match to protein family HMM PF02687.
 
 
 0.985
MCA1810
Conserved hypothetical protein; Identified by similarity to SP:P75830.
 
  
 0.923
MCA0742
ABC transporter, ATP-binding family protein; Identified by similarity to SP:P45073; match to protein family HMM PF00005.
 
    
0.912
MCA1561
ABC transporter, ATP-binding protein; Identified by similarity to OMNI:NTL03PA03672; match to protein family HMM PF00005.
 
    
0.907
MCA1214
ABC transporter, ATP-binding/permease protein; Identified by similarity to OMNI:NMB0264; match to protein family HMM PF00005; match to protein family HMM PF00664.
    
0.901
MCA1811
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.814
MCA0589
Putative nitrate transporter; Identified by similarity to SP:P38043.
 
    
 0.777
MCA1277
Putative outer membrane protein TolC; Identified by similarity to SP:P02930; match to protein family HMM PF02321; match to protein family HMM TIGR01844.
   
 
 0.723
MCA2226
Conserved hypothetical protein; Identified by similarity to GP:9946574; match to protein family HMM PF07244.
  
   
 0.671
MCA1807
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
 
 
   0.668
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.