STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA1809ABC transporter, ATP-binding protein; Identified by similarity to SP:P75831; match to protein family HMM PF00005. (235 aa)    
Predicted Functional Partners:
MCA1808
Putative ABC-transporter permease protein; Gene luster supports this as an ABC transporter; identified by match to protein family HMM PF02687.
 
 
 0.986
MCA1810
Conserved hypothetical protein; Identified by similarity to SP:P75830.
 
 
 0.934
MCA0742
ABC transporter, ATP-binding family protein; Identified by similarity to SP:P45073; match to protein family HMM PF00005.
 
    
0.913
MCA1561
ABC transporter, ATP-binding protein; Identified by similarity to OMNI:NTL03PA03672; match to protein family HMM PF00005.
 
    
0.907
MCA1214
ABC transporter, ATP-binding/permease protein; Identified by similarity to OMNI:NMB0264; match to protein family HMM PF00005; match to protein family HMM PF00664.
     
0.900
MCA0589
Putative nitrate transporter; Identified by similarity to SP:P38043.
 
      0.776
MCA1811
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.684
MCA1807
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
 
 
 
 0.678
MCA2836
Putative molybdenum ABC transporter, ATP-binding protein; Identified by similarity to SP:P09833; match to protein family HMM PF00005; match to protein family HMM TIGR00638.
  
     0.648
MCA2624
Lipoprotein ABC transporter, permease protein LolE; Identified by similarity to SP:P75958; match to protein family HMM PF02687; match to protein family HMM TIGR02212.
 
 
 0.635
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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