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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA1810Conserved hypothetical protein; Identified by similarity to SP:P75830. (326 aa)    
Predicted Functional Partners:
MCA1808
Putative ABC-transporter permease protein; Gene luster supports this as an ABC transporter; identified by match to protein family HMM PF02687.
 
  
 0.976
MCA1809
ABC transporter, ATP-binding protein; Identified by similarity to SP:P75831; match to protein family HMM PF00005.
 
 
 0.934
MCA1807
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
 
   
 0.718
MCA2329
Putative outer membrane efflux family protein; Identified by match to protein family HMM PF02321.
  
   0.629
MCA2325
Efflux transporter, RND family, MFP subunit; Identified by similarity to GP:8388788; match to protein family HMM TIGR01730.
  
     0.601
MCA2326
Conserved domain protein.
  
   0.601
MCA1811
Hypothetical protein; Identified by Glimmer2; putative.
       0.586
MCA1595
Multidrug efflux system outer membrane subunit; Identified by similarity to GP:19716262; match to protein family HMM PF02321; match to protein family HMM TIGR01845.
  
   0.566
MCA2814
Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.556
MCA2816
Outer membrane efflux family protein; Identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845.
  
   0.541
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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