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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA1820Conserved hypothetical protein; Identified by similarity to OMNI:NTL01AT0235; match to protein family HMM TIGR02096. (136 aa)    
Predicted Functional Partners:
MCA1821
Conserved hypothetical protein; Identified by similarity to GP:15155134.
 
     0.952
MCA1822
Hydrolase, carbon-nitrogen family; Identified by match to protein family HMM PF00795.
 
     0.897
MCA1819
OmpA domain protein; Identified by match to protein family HMM PF00691.
       0.489
xseA
Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.
       0.411
MCA1816
Rhodanese-like domain; Identified by match to protein family HMM PF00581.
       0.409
hslR
Heat shock protein 15; Identified by similarity to SP:P45802; match to protein family HMM PF01479; Belongs to the HSP15 family.
       0.409
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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