Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCA1840Conserved hypothetical protein; Identified by similarity to OMNI:NTL01PM1826; match to protein family HMM PF02687. (408 aa)    
Predicted Functional Partners:
MCA1841
ABC transporter, ATP-binding family protein; Identified by similarity to OMNI:NTL03PA00074; match to protein family HMM PF00005.
 
 0.980
MCA1842
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01PM1824.
    0.979
MCA1844
Conserved hypothetical protein; Identified by similarity to GP:15980287.
 
     0.951
MCA1845
Conserved hypothetical protein; Identified by similarity to GB:AAK03903.1.
 
     0.951
MCA1846
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01PM1820.
 
    0.939
MCA2146
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01PM1827; match to protein family HMM PF03781.
 
    0.830
MCA1843
Hypothetical protein; Identified by Glimmer2; putative.
       0.780
MCA1539
Conserved domain protein; Identified by similarity to OMNI:NTL01PM1830.
 
     0.772
MCA1809
ABC transporter, ATP-binding protein; Identified by similarity to SP:P75831; match to protein family HMM PF00005.
  
 
 0.555
MCA2172
ABC transporter, ATP-binding family protein; Identified by similarity to OMNI:NTL03PA02857; match to protein family HMM PF00005.
  
 
 0.536
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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