Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
MCA1841ABC transporter, ATP-binding family protein; Identified by similarity to OMNI:NTL03PA00074; match to protein family HMM PF00005. (238 aa)    
Predicted Functional Partners:
MCA1840
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01PM1826; match to protein family HMM PF02687.
 
 0.980
MCA1842
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01PM1824.
  
 0.974
MCA1844
Conserved hypothetical protein; Identified by similarity to GP:15980287.
 
    0.927
MCA1845
Conserved hypothetical protein; Identified by similarity to GB:AAK03903.1.
 
     0.919
MCA1846
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01PM1820.
 
    0.891
MCA1843
Hypothetical protein; Identified by Glimmer2; putative.
       0.817
MCA2146
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01PM1827; match to protein family HMM PF03781.
 
    0.786
MCA1808
Putative ABC-transporter permease protein; Gene luster supports this as an ABC transporter; identified by match to protein family HMM PF02687.
  
 
 0.734
MCA2624
Lipoprotein ABC transporter, permease protein LolE; Identified by similarity to SP:P75958; match to protein family HMM PF02687; match to protein family HMM TIGR02212.
  
 
 0.560
MCA2173
Conserved hypothetical protein; Identified by similarity to OMNI:DRB0050.
  
 
 0.536
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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