STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA1869Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SS00582; match to protein family HMM PF07883. (119 aa)    
Predicted Functional Partners:
MCA1870
ribD C-terminal domain protein.
       0.773
MCA1871
Putative ubiquinone biosynthesis protein AarF; Identified by similarity to SP:P27854; match to protein family HMM PF03109.
       0.727
recQ
ATP-dependent DNA helicase RecQ; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389.
 
     0.616
MCA0608
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SS02055.
  
     0.524
MCA1867
Putative ferredoxin, 2Fe-2S; Identified by similarity to PIR:JC7085.
       0.466
MCA0647
Identified by match to protein family HMM PF07885.
 
     0.437
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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