STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA1870ribD C-terminal domain protein. (281 aa)    
Predicted Functional Partners:
ribBA
3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
  
 
 0.867
MCA1869
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SS00582; match to protein family HMM PF07883.
       0.773
MCA1871
Putative ubiquinone biosynthesis protein AarF; Identified by similarity to SP:P27854; match to protein family HMM PF03109.
     
 0.730
MCA0197
Conserved hypothetical protein; Identified by similarity to OMNI:NTL02SS0707; match to protein family HMM PF01864.
  
     0.720
MCA1503
Putative membrane protein; Identified by similarity to OMNI:NTL03PA04934.
  
     0.627
MCA0863
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA01616.
  
     0.600
MCA0807
Copper resistance protein; Identified by match to protein family HMM PF05425.
  
     0.596
MCA0983
Putative membrane protein; Identified by similarity to GP:19914454; match to protein family HMM PF07758.
  
     0.586
rpiA
Ribose 5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
 
      0.576
MCA0943
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.575
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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