Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MCA1871Putative ubiquinone biosynthesis protein AarF; Identified by similarity to SP:P27854; match to protein family HMM PF03109. (568 aa)    
Predicted Functional Partners:
MCA1869
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SS00582; match to protein family HMM PF07883.
       0.727
MCA1870
ribD C-terminal domain protein.
       0.727
recQ
ATP-dependent DNA helicase RecQ; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389.
  
    0.527
MCA1867
Putative ferredoxin, 2Fe-2S; Identified by similarity to PIR:JC7085.
       0.447
MCA1754
Monooxygenase, FAD-binding; Identified by match to protein family HMM PF01360; match to protein family HMM TIGR01988.
   
 0.406
ubiH
2-octaprenyl-6-methoxyphenol hydroxylase; Identified by similarity to SP:P25534; match to protein family HMM PF01360; match to protein family HMM TIGR01984; match to protein family HMM TIGR01988.
   
 0.406
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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