Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCA1887Conserved hypothetical protein; Identified by similarity to GP:6899520. (80 aa)    
Predicted Functional Partners:
MCA1894
Conserved hypothetical protein; Identified by similarity to GP:19919303; match to protein family HMM PF01863.
 
     0.671
MCA1886
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SPL0989.
 
     0.646
MCA1889
Conserved hypothetical protein; Identified by similarity to GP:6723238.
       0.626
MCA1893
Type I restriction-modification system, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.
       0.612
MCA1890
Type I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420.
       0.609
hsdM
Type I restriction-modification system, M subunit; Identified by similarity to GP:17984614; match to protein family HMM PF02384; match to protein family HMM PF02506; match to protein family HMM TIGR00497.
       0.606
MCA1891
Conserved hypothetical protein; Identified by similarity to GP:6009450; match to protein family HMM PF02231.
       0.598
MCA1892
Conserved hypothetical protein; Identified by similarity to GP:19916049; match to protein family HMM PF04326.
       0.598
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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