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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA1895ISMca3, transposase, OrfA; Identified by match to protein family HMM PF01527. (107 aa)    
Predicted Functional Partners:
MCA1896
ISMca3, transposase, OrfB; Identified by match to protein family HMM PF00665.
    0.953
MCA0735
ISMca3, transposase, OrfB; Identified by match to protein family HMM PF00665.
    0.889
MCA1894
Conserved hypothetical protein; Identified by similarity to GP:19919303; match to protein family HMM PF01863.
      0.867
MCA1893
Type I restriction-modification system, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.
       0.444
hsdM
Type I restriction-modification system, M subunit; Identified by similarity to GP:17984614; match to protein family HMM PF02384; match to protein family HMM PF02506; match to protein family HMM TIGR00497.
       0.442
MCA1889
Conserved hypothetical protein; Identified by similarity to GP:6723238.
       0.442
MCA1890
Type I restriction-modification system, S subunit; Identified by match to protein family HMM PF01420.
       0.442
MCA1891
Conserved hypothetical protein; Identified by similarity to GP:6009450; match to protein family HMM PF02231.
       0.442
MCA1892
Conserved hypothetical protein; Identified by similarity to GP:19916049; match to protein family HMM PF04326.
       0.442
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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