Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCA1905Conserved hypothetical protein; Identified by similarity to SP:O67300. (505 aa)    
Predicted Functional Partners:
MCA1903
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01AA00874.
 
     0.871
vacJ
vacJ lipoprotein; Identified by similarity to SP:P76506; match to protein family HMM PF04333.
    
 
 0.762
MCA0340
Putative membrane protein; Identified by similarity to GP:17133197.
  
     0.711
MCA1904
Putative lipoprotein.
       0.697
MCA2410
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.573
MCA3097
Conserved hypothetical protein; Identified by similarity to OMNI:VC2455.
 
    0.547
MCA2834
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01MT00914.
  
     0.524
MCA2129
Identified by similarity to GP:4580028; match to protein family HMM PF07731; match to protein family HMM PF07732.
  
     0.511
MCA1768
Putative outer membrane heavy metal efflux protein; Identified by similarity to OMNI:CC2721; match to protein family HMM PF02321.
  
     0.510
MCA2966
Conserved domain protein; Identified by similarity to OMNI:CC1988.
  
     0.472
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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