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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA1940Hypothetical protein; Identified by Glimmer2; putative. (48 aa)    
Predicted Functional Partners:
MCA1941
Putative sugar ABC transporter, sugar-binding protein; Identified by similarity to OMNI:NTL01LM1722; match to protein family HMM PF01547.
       0.689
MCA1942
Sugar ABC transporter, permease protein; Identified by similarity to SP:P29823; match to protein family HMM PF00528.
       0.689
MCA1937
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
       0.546
MCA1938
Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
       0.546
MCA1939
DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
       0.546
MCA1935
Identified by match to protein family HMM PF00873; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.542
MCA1936
Putative transporter; Identified by similarity to SP:P94176; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.542
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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