Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MCA1941Putative sugar ABC transporter, sugar-binding protein; Identified by similarity to OMNI:NTL01LM1722; match to protein family HMM PF01547. (434 aa)    
Predicted Functional Partners:
MCA1942
Sugar ABC transporter, permease protein; Identified by similarity to SP:P29823; match to protein family HMM PF00528.
 0.999
MCA1924
ABC transporter, permease family protein; Identified by similarity to OMNI:TM0812; match to protein family HMM PF00528.
 
 
 0.996
MCA1944
Sugar ABC transportor, ATP-binding protein; Identified by similarity to SP:P19566; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
 
 
 0.990
MCA0553
Discoidin domain protein; Identified by similarity to GP:9107638; match to protein family HMM PF00754; match to protein family HMM PF01851.
 
    0.758
MCA1586
Conserved hypothetical protein; Identified by similarity to GP:15978700.
 
   
 0.727
MCA1940
Hypothetical protein; Identified by Glimmer2; putative.
       0.689
MCA0840
Putative periplasmic amino acid-binding protein; Identified by similarity to SP:P30860.
  
  
 0.671
MCA1264
ABC transporter, periplasmic substrate-binding protein; Identified by similarity to SP:P23843; match to protein family HMM PF00496.
      
 0.666
MCA1872
C4-dicarboxylate transporter; Identified by similarity to SP:P37312; match to protein family HMM PF00375; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
   
  
 0.621
MCA1268
ABC transporter, ATP-binding protein; Identified by similarity to OMNI:NTL03PA01808; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
      
 0.618
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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