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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA1941Putative sugar ABC transporter, sugar-binding protein; Identified by similarity to OMNI:NTL01LM1722; match to protein family HMM PF01547. (434 aa)    
Predicted Functional Partners:
MCA1942
Sugar ABC transporter, permease protein; Identified by similarity to SP:P29823; match to protein family HMM PF00528.
 0.999
MCA1924
ABC transporter, permease family protein; Identified by similarity to OMNI:TM0812; match to protein family HMM PF00528.
 
 
 0.994
MCA1944
Sugar ABC transportor, ATP-binding protein; Identified by similarity to SP:P19566; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily.
 
 
 0.982
MCA0553
Discoidin domain protein; Identified by similarity to GP:9107638; match to protein family HMM PF00754; match to protein family HMM PF01851.
 
    0.765
MCA1586
Conserved hypothetical protein; Identified by similarity to GP:15978700.
 
   
 0.739
MCA1940
Hypothetical protein; Identified by Glimmer2; putative.
       0.689
MCA0941
Putative glycosyl hydrolase; Identified by match to protein family HMM PF01301; Belongs to the glycosyl hydrolase 35 family.
 
   
 0.651
MCA1937
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
       0.492
MCA1938
Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
       0.492
MCA1939
DNA-binding response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.
       0.492
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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