Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MCA1944Sugar ABC transportor, ATP-binding protein; Identified by similarity to SP:P19566; match to protein family HMM PF00005; Belongs to the ABC transporter superfamily. (356 aa)    
Predicted Functional Partners:
MCA1942
Sugar ABC transporter, permease protein; Identified by similarity to SP:P29823; match to protein family HMM PF00528.
 
 
 0.993
MCA1924
ABC transporter, permease family protein; Identified by similarity to OMNI:TM0812; match to protein family HMM PF00528.
 
 0.990
MCA1941
Putative sugar ABC transporter, sugar-binding protein; Identified by similarity to OMNI:NTL01LM1722; match to protein family HMM PF01547.
 
 
 0.990
MCA0589
Putative nitrate transporter; Identified by similarity to SP:P38043.
 
    
 0.648
potB
Spermidine/putrescine ABC transporter, permease protein PotB; Identified by similarity to SP:P23860; match to protein family HMM PF00528.
   
 0.647
MCA2579
Molybdenum ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
      0.603
MCA1943
Hypothetical protein; Identified by Glimmer2; putative.
       0.561
cysT
Sulfate ABC transporter, permease protein; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
      0.556
MCA0174
Putative ABC transporter, permease protein; Gene cluster is evidence for assignment as ABC transporter subunit; identified by match to protein family HMM PF02405.
     
 0.552
MCA1399
Putative ABC transporter, permease protein; Gene cluster supports this as an ABC transporter component; identified by match to protein family HMM PF02687.
     
  0.540
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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