STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA1966STAS domain protein; Identified by match to protein family HMM PF01740. (120 aa)    
Predicted Functional Partners:
MCA1967
Conserved hypothetical protein; Identified by similarity to GP:4336800; match to protein family HMM PF02470.
 
 0.981
MCA1969
ABC transporter, ATP-binding family protein; Identified by similarity to SP:P45393; match to protein family HMM PF00005.
 
 0.978
MCA1968
Conserved hypothetical protein TIGR00056; Identified by similarity to OMNI:VC2519; match to protein family HMM PF02405; match to protein family HMM TIGR00056.
 
 0.974
MCA2792
Conserved hypothetical protein; Identified by similarity to OMNI:CC3693; match to protein family HMM PF05494.
 
 
 0.939
MCA0806
Conserved hypothetical protein; Identified by similarity to OMNI:NMB1963.
 
 
 0.917
MCA0173
ABC transporter, ATP-binding protein; Identified by similarity to OMNI:NTL01SM01832; match to protein family HMM PF00005.
  
 0.870
MCA0172
Mce family protein; Identified by similarity to GP:17427324; match to protein family HMM PF02470.
  
 0.856
MCA0174
Putative ABC transporter, permease protein; Gene cluster is evidence for assignment as ABC transporter subunit; identified by match to protein family HMM PF02405.
  
 0.851
hisD
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
  
    0.820
hisG
ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity. Belongs to the ATP phosphoribosyltransferase family. Short subfamily.
       0.816
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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