STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MCA2011Identified by similarity to SP:Q8Z9E1; match to protein family HMM PF07731; match to protein family HMM PF07732; match to protein family HMM TIGR01409. (570 aa)    
Predicted Functional Partners:
MCA2130
Conserved hypothetical protein; Identified by similarity to GP:3282847.
      
 0.740
MCA2129
Identified by similarity to GP:4580028; match to protein family HMM PF07731; match to protein family HMM PF07732.
  
     0.636
MCA2703
Serine protease, trypsin family; Identified by match to protein family HMM PF00089.
    
 0.586
MCA2012
Hypothetical protein; Identified by Glimmer2; putative.
       0.525
MCA2128
Hypothetical protein; Identified by Glimmer2; putative.
   
 
 0.512
MCA2185
Putative lipoprotein; Identified by similarity to OMNI:NTL03PA05329.
    
   0.479
MCA0316
Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.
  
     0.469
MCA1701
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.451
tatC
Sec-independent protein translocase TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.
    
 
 0.449
tatB
Sec-independent protein translocase protein TatB; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.
    
 
 0.428
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.