Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MCA2029Conserved domain protein. (246 aa)    
Predicted Functional Partners:
zapD
Conserved hypothetical protein; Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity.
  
     0.685
MCA2890
Conserved hypothetical protein; Identified by similarity to GP:9949974; match to protein family HMM PF07721.
  
     0.677
MCA2846
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01NM00155.
  
     0.631
MCA2028
Putative membrane-bound lytic murein transglycosylase; Identified by similarity to SP:P23931; match to protein family HMM PF01464; match to protein family HMM PF01476.
     
 0.608
MCA3090
Conserved domain protein; Identified by similarity to OMNI:NTL03PA05053; match to protein family HMM PF05036.
  
     0.600
MCA0860
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA05280; match to protein family HMM PF04340.
  
     0.577
mreD
Rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family.
  
     0.540
MCA3062
Putative hemY protein; Identified by similarity to SP:P09128; match to protein family HMM PF00515; match to protein family HMM PF07219.
  
     0.539
MCA1469
Putative sigma-E factor regulatory protein; Identified by similarity to SP:P46186.
  
     0.514
MCA1534
Identified by match to protein family HMM PF02325.
  
     0.512
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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