Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
vacJvacJ lipoprotein; Identified by similarity to SP:P76506; match to protein family HMM PF04333. (284 aa)    
Predicted Functional Partners:
MCA2792
Conserved hypothetical protein; Identified by similarity to OMNI:CC3693; match to protein family HMM PF05494.
 
 
 
 0.985
MCA1967
Conserved hypothetical protein; Identified by similarity to GP:4336800; match to protein family HMM PF02470.
 
   
 0.886
MCA0806
Conserved hypothetical protein; Identified by similarity to OMNI:NMB1963.
 
 
 
 0.822
MCA1905
Conserved hypothetical protein; Identified by similarity to SP:O67300.
    
 
 0.762
MCA1968
Conserved hypothetical protein TIGR00056; Identified by similarity to OMNI:VC2519; match to protein family HMM PF02405; match to protein family HMM TIGR00056.
 
   
 0.668
MCA0555
ABC transporter, ATP-binding/permease protein; Identified by similarity to OMNI:NTL03PA05232; match to protein family HMM PF00005; match to protein family HMM PF01061.
     
 0.663
MCA0091
Conserved domain protein; Identified by similarity to GP:17431765; match to protein family HMM PF07963; match to protein family HMM TIGR02532.
     
 0.639
MCA0090
Putative type IV fimbrial biogenesis protein PilV; Identified by similarity to OMNI:NTL03PA04552; match to protein family HMM PF07963; match to protein family HMM TIGR02523; match to protein family HMM TIGR02532.
     
 0.633
MCA1510
Fimbrial protein; Identified by similarity to SP:P05431; match to protein family HMM PF00114; match to protein family HMM PF07963; match to protein family HMM TIGR02532; Belongs to the N-Me-Phe pilin family.
      
 0.623
pilE
Type 4 fimbrial biogenesis protein PilE; Identified by similarity to OMNI:NTL03PA04557; match to protein family HMM PF00114; match to protein family HMM PF07963; match to protein family HMM TIGR02532.
     
 0.620
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
Server load: low (12%) [HD]