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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vacJvacJ lipoprotein; Identified by similarity to SP:P76506; match to protein family HMM PF04333. (284 aa)    
Predicted Functional Partners:
MCA2792
Conserved hypothetical protein; Identified by similarity to OMNI:CC3693; match to protein family HMM PF05494.
 
 
 
 0.897
MCA1967
Conserved hypothetical protein; Identified by similarity to GP:4336800; match to protein family HMM PF02470.
 
   
 0.825
MCA1905
Conserved hypothetical protein; Identified by similarity to SP:O67300.
    
 
 0.809
MCA0806
Conserved hypothetical protein; Identified by similarity to OMNI:NMB1963.
 
 
 
 0.808
MCA1968
Conserved hypothetical protein TIGR00056; Identified by similarity to OMNI:VC2519; match to protein family HMM PF02405; match to protein family HMM TIGR00056.
 
   
 0.597
rnt
Ribonuclease T; Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis.
       0.580
comL
Competence lipoprotein ComL; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
  
 0.453
lptD
Putative organic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
 
   
 0.422
MCA1969
ABC transporter, ATP-binding family protein; Identified by similarity to SP:P45393; match to protein family HMM PF00005.
 
   
 0.406
Your Current Organism:
Methylococcus capsulatus
NCBI taxonomy Id: 243233
Other names: M. capsulatus str. Bath, Methylococcus capsulatus ATCC 33009, Methylococcus capsulatus Bath, Methylococcus capsulatus MC, Methylococcus capsulatus NCIB 11132, Methylococcus capsulatus str. Bath
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.